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Found 37 results

2011
Earl DA, Bradnam K, St John J, Darling A, Lin D, Faas J, Yu HO, Vince B, Zerbino DR, Diekhans M et al..  2011.  Assemblathon 1: A competitive assessment of de novo short read assembly methods. Genome research. Abstract
Abi-Rached L, Jobin MJ, Kulkarni S, McWhinnie A, Dalva K, Gragert L, Babrzadeh F, Gharizadeh B, Luo M, Plummer FA et al..  2011.  The shaping of modern human immune systems by multiregional admixture with archaic humans. Science. 334:89-94. Abstract
Graveley BR, Brooks AN, Carlson JW, Duff MO, Landolin JM, Yang L, Artieri CG, van Baren MJ, Boley N, Booth BW et al..  2011.  The developmental transcriptome of Drosophila melanogaster. Nature. 471:473-9. Abstract
Taliaferro JM, Alvarez N, Green RE, Blanchette M, Rio DC.  2011.  Evolution of a tissue-specific splicing network. Genes & development. 25:608-20. Abstract
Albert FW, Hodges E, Jensen JD, Besnier F, Xuan Z, Rooks M, Bhattacharjee A, Brizuela L, Good JM, Green RE et al..  2011.  Targeted resequencing of a genomic region influencing tameness and aggression reveals multiple signals of positive selection. Heredity. Abstract
2010
Green RE, Krause J, Briggs AW, Maricic T, Stenzel U, Kircher M, Patterson N, Li H, Zhai W, Fritz MH et al..  2010.  A draft sequence of the Neandertal genome. Science. 328:710-22. Abstract
Burbano HA, Hodges E, Green RE, Briggs AW, Krause J, Meyer M, Good JM, Maricic T, Johnson PL, Xuan Z et al..  2010.  Targeted investigation of the Neandertal genome by array-based sequence capture. Science. 328:723-5. Abstract
Reich D, Green RE, Kircher M, Krause J, Patterson N, Durand EY, Viola B, Briggs AW, Stenzel U, Johnson PL et al..  2010.  Genetic history of an archaic hominin group from Denisova Cave in Siberia. Nature. 468:1053-60. Abstract
Prufer K, Stenzel U, Hofreiter M, Paabo S, Kelso J, Green RE.  2010.  Computational challenges in the analysis of ancient DNA. Genome Biol. 11:R47. Abstract
Rohland N, Reich D, Mallick S, Meyer M, Green RE, Georgiadis NJ, Roca AL, Hofreiter M.  2010.  Genomic DNA sequences from mastodon and woolly mammoth reveal deep speciation of forest and savanna elephants. PLoS biology. 8:e1000564. Abstract
2009
Green RE, Briggs AW, Krause J, Prufer K, Burbano HA, Siebauer M, Lachmann M, Paabo S.  2009.  The Neandertal genome and ancient DNA authenticity. The EMBO journal. 28:2494-502. Abstract
Haussler D, O'Brien SJ, Ryder OA, Barker FK, Clamp M, Crawford AJ, Hanner R, Hanotte O, Johnson WE, McGuire JA et al..  2009.  Genome 10K: A Proposal to Obtain Whole-Genome Sequence for 10 000 Vertebrate Species. Journal of Heredity. 100:659-674. Abstract
Hansen KD, Lareau LF, Blanchette M, Green RE, Meng Q, Rehwinkel J, Gallusser FL, Izaurralde E, Rio DC, Dudoit S et al..  2009.  Genome-wide identification of alternative splice forms down-regulated by nonsense-mediated mRNA decay in Drosophila. PLoS Genet. 5:e1000525. Abstract
Briggs AW, Good JM, Green RE, Krause J, Maricic T, Stenzel U, Lalueza-Fox C, Rudan P, Brajkovic D, Kucan Z et al..  2009.  Targeted retrieval and analysis of five Neandertal mtDNA genomes. Science. 325:318-21. Abstract
Blanchette M, Green RE, MacArthur S, Brooks AN, Brenner SE, Eisen MB, Rio DC.  2009.  Genome-wide analysis of alternative pre-mRNA splicing and RNA-binding specificities of the Drosophila hnRNP A/B family members. Mol Cell. 33:438-49. Abstract
Briggs AW, Good JM, Green RE, Krause J, Maricic T, Stenzel U, Paabo S.  2009.  Primer extension capture: targeted sequence retrieval from heavily degraded DNA sources. J Vis Exp. :1573. Abstract
2008
Prufer K, Stenzel U, Dannemann M, Green RE, Lachmann M, Kelso J.  2008.  PatMaN: rapid alignment of short sequences to large databases. Bioinformatics. 24:1530-1. Abstract
Myles S, Tang K, Somel M, Green RE, Kelso J, Stoneking M.  2008.  Identification and analysis of genomic regions with large between-population differentiation in humans. Ann Hum Genet. 72:99-110. Abstract
Green RE, Malaspinas AS, Krause J, Briggs AW, Johnson PL, Uhler C, Meyer M, Good JM, Maricic T, Stenzel U et al..  2008.  A complete Neandertal mitochondrial genome sequence determined by high-throughput sequencing. Cell. 134:416-26. Abstract
2007
Briggs AW, Stenzel U, Johnson PL, Green RE, Kelso J, Prufer K, Meyer M, Krause J, Ronan MT, Lachmann M et al..  2007.  Patterns of damage in genomic DNA sequences from a Neandertal. Proc Natl Acad Sci U S A. 104:14616-21. Abstract
Chen H, Green RE, Paabo S, Slatkin M.  2007.  The joint allele-frequency spectrum in closely related species. Genetics. 177:387-98. Abstract
Krause J, Lalueza-Fox C, Orlando L, Enard W, Green RE, Burbano HA, Hublin JJ, Hanni C, Fortea J, de la Rasilla M et al..  2007.  The derived FOXP2 variant of modern humans was shared with Neandertals. Curr Biol. 17:1908-12. Abstract
Lareau LF, Inada M, Green RE, Wengrod JC, Brenner SE.  2007.  Unproductive splicing of SR genes associated with highly conserved and ultraconserved DNA elements. Nature. 446:926-9. Abstract
2006
Stiller M, Green RE, Ronan M, Simons JF, Du L, He W, Egholm M, Rothberg JM, Keates SG, Ovodov ND et al..  2006.  Patterns of nucleotide misincorporations during enzymatic amplification and direct large-scale sequencing of ancient DNA. Proc Natl Acad Sci U S A. 103:13578-84. Abstract
Khaitovich P, Kelso J, Franz H, Visagie J, Giger T, Joerchel S, Petzold E, Green RE, Lachmann M, Paabo S.  2006.  Functionality of intergenic transcription: an evolutionary comparison. PLoS Genet. 2:e171. Abstract
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